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jenjou

ENCD-5054-revise-biosample-search-result-link-age-display (#3118)

Feb 5, 2020

57546c3 · Feb 5, 2020

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{ "title": "Biosample", "description": "Schema for submitting a biosample.", "comment": "For cultured samples this object represents unique growths or culture harvests.", "id": "/profiles/biosample.json", "$schema": "http://json-schema.org/draft-04/schema#", "type": "object", "required": [ "award", "lab", "source", "organism", "biosample_ontology"], "identifyingProperties": ["uuid", "accession", "aliases"], "additionalProperties": false, "mixinProperties": [ {"$ref": "mixins.json#/genetic_modifications"}, {"$ref": "mixins.json#/biosample_ontology"}, {"$ref": "mixins.json#/product_id"}, {"$ref": "mixins.json#/lot_id"}, {"$ref": "mixins.json#/source"}, {"$ref": "mixins.json#/references"}, {"$ref": "mixins.json#/documents"}, {"$ref": "mixins.json#/submitter_comment"}, {"$ref": "mixins.json#/notes"}, {"$ref": "mixins.json#/submitted"}, {"$ref": "mixins.json#/attribution"}, {"$ref": "mixins.json#/accessioned_status"}, {"$ref": "mixins.json#/schema_version"}, {"$ref": "mixins.json#/aliases"}, {"$ref": "mixins.json#/url"}, {"$ref": "mixins.json#/accession"}, {"$ref": "mixins.json#/uuid"} ], "dependencies": { "biosample_ontology": { "not": { "properties": { "biosample_ontology": { "linkTo": "BiosampleType", "linkEnum": [ "25d5ad53-15fd-4a44-878a-ece2f7e86509", "2b3b4181-45b6-4da1-82f8-104e28601d1e" ] }, "organism": { "linkTo": "Organism", "linkEnum": [ "7745b647-ff15-4ff3-9ced-b897d4e2983c" ] } } } }, "post_synchronization_time_units": { "comment": "Biosample with a specified post_synchronization_units requires post_synchronization_time specification and specification of the model organism synchronization stage.", "allOf":[ { "not": { "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "7745b647-ff15-4ff3-9ced-b897d4e2983c", "3413218c-3d86-498b-a0a2-9a406638e786" ] } } } }, { "oneOf": [ { "required": ["fly_synchronization_stage", "post_synchronization_time"] }, { "required": ["worm_synchronization_stage", "post_synchronization_time"] } ] } ] }, "post_treatment_time": { "required":["post_treatment_time_units", "treatments"], "comment": "Biosample with a specified post_treatment_time requires non-empty treatments list and post_treatment_time_units specification.", "properties":{ "treatments": { "minItems": 1 } } }, "post_treatment_time_units": { "required":["post_treatment_time", "treatments"], "comment": "Biosample with a specified post_treatment_time_units requires non-empty treatments list post_treatment_time specification.", "properties":{ "treatments": { "minItems": 1 } } }, "post_differentiation_time": { "required":["post_differentiation_time_units"], "comment": "Biosample with a specified post_differentiation_time requires post_differentiation_time_units specification." }, "post_differentiation_time_units": { "required":["post_differentiation_time"], "comment": "Biosample with a specified post_differentiation_time_units requires post_differentiation_time specification." }, "pooled_from": { "comment": "Biosample with a specified pooled_from list requires at least two entries in the list.", "properties":{ "pooled_from": { "minItems": 2 } } }, "starting_amount":{ "required": ["starting_amount_units"], "comment": "Biosamples with a specified starting_amount require starting_amount_units to also be specified." }, "starting_amount_units": { "required":["starting_amount"], "comment": "Biosamples with a specified starting_amount_units require starting_amount to also be specified." }, "PMI":{ "required": ["PMI_units"], "comment": "Tissue biosamples with a specified PMI require PMI_units to also be specified." }, "PMI_units": { "required":["PMI"], "comment": "Tissue biosamples with a specified PMI_units require PMI to also be specified." }, "model_organism_age_units": { "required":["model_organism_age"], "comment": "Biosample with a specified model_organism_age_units requires model_organism_age specification." }, "model_organism_age": { "comment": "Biosample with a specified model_organism_age requires model_organism_age_units specification.", "required": ["model_organism_age_units"] }, "model_organism_mating_status": { "comment": "Biosample with a specified model_organism_mating_status requires model_organism_sex specification.", "required": ["model_organism_sex"] }, "organism":{ "comment": "Human biosamples are not allowed to have model organism properties, and biosample_ontology classification should be different from whole organisms.", "oneOf": [ { "not": { "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "7745b647-ff15-4ff3-9ced-b897d4e2983c" ] } } } }, { "allOf": [ { "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "7745b647-ff15-4ff3-9ced-b897d4e2983c" ] } } }, { "not": { "required": ["model_organism_mating_status"] } }, { "not": { "required": ["model_organism_sex"] } }, { "not": { "required": ["model_organism_health_status"] } }, { "not": { "required": ["model_organism_age"] } } ] } ] }, "post_synchronization_time": { "comment": "Human and mouse biosamples are not allowed to have post_synchronization_time property. Biosample with a specified post_synchronization_time requires post_synchronization_time_units specification and model organism synchronization stage.", "allOf":[ { "not": { "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "7745b647-ff15-4ff3-9ced-b897d4e2983c", "3413218c-3d86-498b-a0a2-9a406638e786" ] } } } }, { "oneOf": [ { "required": ["fly_synchronization_stage", "post_synchronization_time_units"] }, { "required": ["worm_synchronization_stage", "post_synchronization_time_units"] } ] } ] }, "fly_life_stage": { "comment": "Only fly biosamples are allowed to have fly_life_stage property.", "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "ab546d43-8e2a-4567-8db7-a217e6d6eea0", "5be68469-94ba-4d60-b361-dde8958399ca", "74144f1f-f3a6-42b9-abfd-186a1ca93198", "c3cc08b7-7814-4cae-a363-a16b76883e3f", "d1072fd2-8374-4f9b-85ce-8bc2c61de122", "b9ce90a4-b791-40e9-9b4d-ffb1c6a5aa2b", "0bdd955a-57f0-4e4b-b93d-6dd1df9b766c" ] } } }, "fly_synchronization_stage": { "comment": "Only fly biosamples are allowed to have fly_synchronization_stage property.", "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "ab546d43-8e2a-4567-8db7-a217e6d6eea0", "5be68469-94ba-4d60-b361-dde8958399ca", "74144f1f-f3a6-42b9-abfd-186a1ca93198", "c3cc08b7-7814-4cae-a363-a16b76883e3f", "d1072fd2-8374-4f9b-85ce-8bc2c61de122", "b9ce90a4-b791-40e9-9b4d-ffb1c6a5aa2b", "0bdd955a-57f0-4e4b-b93d-6dd1df9b766c" ] } } }, "worm_synchronization_stage": { "comment": "Only roundworm biosamples are allowed to have worm_synchronization_stage property.", "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20", "e3ec4c1b-a203-4fe7-a013-96c2d45ab242", "69efae2b-4df5-4957-81da-346f1b93cb98", "a7e711b9-534c-44a3-a782-2a15af620739", "451f9e49-685d-40d5-ad89-760b2512262a" ] } } }, "worm_life_stage": { "comment": "Only roundworm biosamples are allowed to have worm_life_stage property.", "properties": { "organism": { "linkTo": "Organism", "linkEnum": [ "2732dfd9-4fe6-4fd2-9d88-61b7c58cbe20", "e3ec4c1b-a203-4fe7-a013-96c2d45ab242", "69efae2b-4df5-4957-81da-346f1b93cb98", "a7e711b9-534c-44a3-a782-2a15af620739", "451f9e49-685d-40d5-ad89-760b2512262a" ] } } }, "mouse_life_stage": { "comment": "Only mouse biosamples are allowed to have mouse_life_stage property.", "properties": { "organism": { "linkTo": "Organism", "linkEnum": ["3413218c-3d86-498b-a0a2-9a406638e786"] } } } }, "properties": { "schema_version": { "default": "24" }, "accession": { "accessionType": "BS" }, "alternate_accessions": { "title": "Alternate accessions", "description": "Accessions previously assigned to objects that have been merged with this object.", "comment": "Do not submit. Only admins are allowed to set or update this value.", "type": "array", "default": [], "permission": "import_items", "items": { "title": "Alternate Accession", "description": "An accession previously assigned to an object that has been merged with this object.", "comment": "Only accessions of objects that have status equal replaced will work here.", "type": "string", "format": "accession", "pattern": "^(ENCBS\\d{3}[A-Z]{3})$|^(TSTBS\\d{6})$" } }, "description": { "title": "Description", "description": "A plain text description of the biosample. Do not include experiment details, genetic modifications or treatments.", "comment": "Free text description of the biosample, do not mix with biosample summary that is calculated and controlled.", "type": "string", "elasticsearch_mapping_index_type": { "title": "Field mapping index type", "description": "Defines one of three types of indexing available", "type": "string", "default": "analyzed", "enum": [ "analyzed", "no", "not_analyzed" ] }, "pattern": "^(\\S+(\\s|\\S)*\\S+|\\S)$|^$", "formInput": "textarea" }, "treatments": { "title": "Treatments", "description": "A list of treatments applied to the biosample.", "comment": "A list of treatments applied to the biosample, it is required to be non-empty if post_treatment_time or post_treatment_time_units are specified.", "type": "array", "default": [], "uniqueItems": true, "items": { "title": "Treatment", "comment": "See treatment.json for available identifiers.", "type": "string", "linkTo": "Treatment" } }, "dbxrefs": { "@type": "@id", "rdfs:subPropertyOf": "rdfs:seeAlso", "title": "External resources", "description": "Biosample identifiers from external resources, such as Biosample database or Cellosaurus.", "comment": "Do not submit. DCC personnel is responsible for submission of biosample external resource identifiers.", "permission": "import_items", "type": "array", "default": [], "uniqueItems": true, "items": { "title": "External identifier", "description": "An identifier from external resource.", "type": "string", "pattern": "^((UCSC-ENCODE-cv:[\\S\\s\\d\\-\\(\\)\\+]+)|(GTEx:[a-zA-Z0-9\\-_]+)|(GEO:SAMN\\d+)|(Cellosaurus:CVCL_\\w{4}))$" } }, "documents": { "description": "Documents that describe the biosample preparation." }, "donor": { "title": "Donor", "description": "The donor or strain the biosample was originated from.", "comment": "For human biosamples, see human_donor.json for available identifiers. For mouse biosamples, see mouse_donor.json for available identifiers. For worm biosamples, see worm_donor.json for available identifiers. For fly biosamples, see fly_donor.json for available identifiers.", "type": "string", "linkTo": "Donor" }, "organism": { "title": "Organism", "description": "The organism the biosample was originated from.", "comment": "See organism.json for available identifiers.", "type": "string", "linkTo": "Organism" }, "passage_number": { "title": "Passage number", "description": "Number of passages including the passages from the source.", "comment": "In calculating passage number, include passages from the source.", "type": "integer", "minimum": 0 }, "depleted_in_term_name": { "title": "Depleted in term", "type": "array", "uniqueItems": true, "description": "UBERON (Uber Anatomy Ontology) term best matching the tissue(s)/body part(s) that were removed from the biosample.", "items": { "type": "string", "enum": [ "adult maxillary segment", "antenna", "arthropod fat body", "digestive system", "female gonad", "female reproductive system", "head", "limb", "male accessory sex gland", "male reproductive system", "salivary gland", "testis" ] } }, "model_organism_mating_status": { "title": "Model organism mating status", "description": "The mating status of the animal.", "comment": "The value is not available for human biosamples.", "type": "string", "enum": [ "mated", "mixed", "sterile", "virgin" ] }, "internal_tags": { "title": "Internal tags", "description": "Some biosamples are part of particular data collections.", "comment" : "Do not submit. Internal tags are for DCC use only.", "type": "array", "default": [], "permission": "import_items", "uniqueItems": true, "items": { "type": "string", "enum": [ "DREAM", "ENCORE", "ENTEx", "SESCC" ] } }, "originated_from": { "title": "Originated from", "description": "A biosample that the sample was orginated from.", "comment": "See biosample.json for available identifiers.", "type": "string", "linkTo": "Biosample" }, "pooled_from": { "title": "Pooled from", "description": "The biosamples from which aliquots were pooled to form the biosample.", "comment": "A list of biosamples used to create the biosample, if specified, it requires minimum of two entries.", "type": "array", "uniqueItems": true, "items": { "description": "A biosample from which an aliquot was taken to form the biosample.", "comment": "See biosample.json for available identifiers.", "type": "string", "linkTo": "Biosample" } }, "part_of": { "title": "Separated from", "description": "A biosample from which a discrete component was taken. That component is this biosample.", "comment": "See biosamples.json for available identifiers.", "type": "string", "linkTo": "Biosample" }, "host": { "title": "Host biosample", "description": "A biosample that was hosting this biosample.", "comment": "For example a mouse could be a host of bone marrow biosample in case of transplantation. See biosamples.json for available identifiers.", "type": "string", "linkTo": "Biosample" }, "subcellular_fraction_term_name": { "title": "Subcellular fraction", "description": "The GO (Gene Ontology) term name for cellular component that constitutes the biosample.", "type": "string", "enum": [ "chromatin", "cytosol", "insoluble cytoplasmic fraction", "membrane", "mitochondria", "nuclear matrix", "nucleolus", "nucleoplasm", "nucleus", "polysome" ] }, "phase": { "title": "Cell cycle phase", "description": "Specification of cell cycle phase of the biosample.", "comment": "The phase property should be limited to biosamples with biosample_ontology classification that belongs to [primary cell, cell line, in vitro differentiated cells].", "type": "string", "enum": [ "G1", "G1b", "G2", "S", "early S", "late S", "S1", "S2", "S3", "S4" ] }, "culture_harvest_date": { "title": "Culture harvest date", "description": "For cultured samples, the date the biosample was taken.", "comment": "Date should be submitted in as YYYY-MM-DD. The property should be limited to biosamples with biosample_ontology classification that belongs to [primary cell, cell line, in vitro differentiated cells].", "type": "string", "format": "date" }, "culture_start_date": { "title": "Culture start date", "description": "For cultured samples, the date the culture was started. For cell lines, the date this particular growth was started, not the date the line was established.", "comment": "Date should be submitted in as YYYY-MM-DD. The property should be limited to biosamples with biosample_ontology classification that belongs to [primary cell, cell line, in vitro differentiated cells].", "type": "string", "format": "date" }, "date_obtained": { "title": "Date obtained", "description": "For tissue samples, the date the biosample was taken.", "comment": "Date should be submitted in as YYYY-MM-DD.", "type": "string", "format": "date" }, "starting_amount": { "title": "Starting amount", "description": "The initial quantity of cells, tissue or animals obtained.", "type": "number", "minimum":0 }, "starting_amount_units": { "title": "Starting amount units", "description": "The units used to quantify the amount of cells or tissue obtained.", "type": "string", "enum": [ "cells", "cells/ml", "g", "items", "mg", "whole animals", "whole embryos", "μg" ] }, "PMI": { "title": "Post-mortem interval", "description": "The amount of time elapsed since death.", "comment": "Post-mortem interval for tissues should be reported, if known. Using for biosamples other than tissue is currently not allowed.", "type": "integer", "minimum": 1 }, "PMI_units": { "title": "Post-mortem interval units", "description": "The unit in which the PMI time was reported.", "comment": "Post-mortem interval units for tissues should be reported with PMI value, if known. Using for biosamples other than tissue is currently not allowed.", "type": "string", "enum": [ "second", "minute", "hour", "day", "week" ] }, "preservation_method": { "title": "Preservation method", "description": "The method by which the sample was preserved: cryopreservation (slow-freeze) or flash-freezing.", "comment": "Indicate the sample preservation_method if known and may be/become an experimental variable to track.", "type": "string", "enum": [ "cryopreservation", "flash-freezing" ] }, "cell_isolation_method": { "title": "Cell isolation method", "description": "The method by which the cell(s) in the sampe were isolated.", "comment": "Indicate the method used to isolate cell(s) in the sample. For example Fluidigm C1 cell isolation should specify: microfluidic cell sorting.", "type": "string", "enum": [ "micropipetting", "microfluidic cell sorting", "dilution", "laser capture microdissection", "fluorescence activated cell sorting" ] }, "model_organism_sex": { "title": "Model organism sex", "type": "string", "description": "The sex of the model organism the biosample comes from.", "comment": "model_organism_sex is not valid for a human biosample.", "enum": [ "female", "male", "mixed", "hermaphrodite", "unknown" ] }, "mouse_life_stage": { "title": "Mouse life stage", "type": "string", "description": "The life stage of the mouse biosample.", "comment": "mouse_life_stage is not valid for a human biosample.", "enum": [ "embryonic", "postnatal", "adult", "unknown" ] }, "fly_life_stage": { "title": "Fly life stage", "type": "string", "description": "Fly development stage of the animals used to prepare the biosample.", "comment": "fly_life_stage is valid only for fly biosamples.", "enum": [ "embryonic", "larva", "first instar larva", "second instar larva", "third instar larva", "wandering third instar larva", "prepupa", "pupa", "adult" ] }, "fly_synchronization_stage": { "title": "Fly synchronization stage", "description": "Fly development stage at which flies were synchronized.", "comment": "Stage at which flies were synchronized. If available use in conjunction with time and time units post-synchronization.", "type": "string", "enum": [ "egg laying", "fertilization", "first larval molt", "second larval molt", "puff stage: PS (1-2), dark blue gut", "puff stage: PS (3-6), light blue gut", "puff stage: PS (7-9), clear gut", "white prepupa", "eclosion" ] }, "post_synchronization_time": { "title": "Post-synchronization time", "description": "The time that elapsed past the point when animals were synchronized.", "comment": "Use in conjunction with fly_synchronization_stage or worm_synchronization_stage to specify time elapsed post-synchronization. It requires specification of post_synchronization_time_units as well.", "type": "string", "pattern": "^(\\d+(\\.[1-9])?(\\-\\d+(\\.[1-9])?)?)|(unknown)$" }, "post_synchronization_time_units": { "title": "Post-synchronization time units", "description": "The units of time that elapsed past the point when animals were synchronized.", "comment": "Use in conjunction with fly_synchronization_stage or worm_synchronization_stage and post_synchronization_time to specify time elapsed post-synchronization.", "type": "string", "enum": [ "minute", "hour", "day", "week", "month", "stage" ] }, "post_treatment_time": { "title": "Post-treatment time", "description": "The time that elapsed past the point when biosamples were treated.", "comment": "Use in conjunction with treatment and post_treatment_time_units to specify time elapsed post-treatment. post_treatment_time specification requires non-empty treatments list and post_treatment_time_units specification.", "type": "string", "pattern": "^(\\d+(\\.[1-9])?(\\-\\d+(\\.[1-9])?)?)|(unknown)$" }, "post_treatment_time_units": { "title": "Post-treatment time units", "description": "The units of time that elapsed past the point when biosamples were treated.", "comment": "Use in conjunction with post_treatment_time and treatment to specify time elapsed post-treatment. post_treatment_time_units specification requires non-empty treatments list and post_treatment_time specification.", "type": "string", "enum": [ "minute", "hour", "day", "week", "month", "stage" ] }, "post_differentiation_time": { "title": "Post-differentiation time", "description": "The time that elapsed past the point when biosamples were differentiated.", "comment": "Use in conjunction with post_differentiation_time_units to specify time elapsed post-differentiation. Use of this property requires post_differentiation_time_units specification.", "type": "integer" }, "post_differentiation_time_units": { "title": "Post-differentiation time units", "description": "The units of time that elapsed past the point when biosamples were differentiated.", "comment": "Use in conjunction with post_differentiation_time to specify time elapsed post-differentiation. Use of this property requires post_differentiation_time specification.", "type": "string", "enum": [ "minute", "hour", "day", "week", "month", "stage" ] }, "worm_life_stage":{ "title": "Worm life stage", "type": "string", "description": "Worm development stage of the animals used to prepare the biosample.", "comment": "worm_life_stage is valid only for worm biosamples.", "enum": [ "early embryonic", "midembryonic", "late embryonic", "mixed stage (embryonic)", "mixed stage (late embryonic and L1 larva)", "L1 larva", "L2 larva", "L2d larva", "L3 larva", "L4 larva", "L4/young adult", "young adult", "dauer", "adult", "mixed stage" ] }, "worm_synchronization_stage": { "title": "Worm synchronization stage", "description": "Worm development stage at which the animals were synchronized.", "comment": "Stage at which worms were synchronized. Use in conjunction with time and time units post-synchronization. worm_life_stage is valid only for worm biosamples.", "type": "string", "enum": [ "egg laying", "egg bleaching", "fertilization", "4 cell", "L1 larva starved after bleaching", "dauer exit" ] }, "model_organism_age": { "title": "Age", "description": " The age or age range of the model donor organism when biological material was sampled.", "type": "string", "comment": "model_organism_age is not valid for a human biosample.", "pattern": "^((\\d+(\\.\\d+)?(\\-\\d+(\\.\\d+)?)?)|(unknown))$" }, "model_organism_age_units": { "title": "Age units", "type": "string", "description": "Age units of the model organism.", "comment": "model_organism_age_units are not valid for a human biosample.", "enum": [ "minute", "hour", "day", "week", "month", "year", "stage" ] }, "model_organism_health_status": { "title": "Model organism health status", "type": "string", "description": "Health status of the model organism.", "comment": "model_organism_health_status is not valid for a human biosample." }, "nih_institutional_certification": { "type": "string", "title": "NIH institutional certification", "description": "Institutional certification given by the NIH for human biosamples.", "comment": "Required for ENCODE4 human biosamples.", "pattern": "^NIC[A-Z0-9]+$" } }, "facets": { "organism.scientific_name": { "title": "Organism" }, "status": { "title": "Status" }, "biosample_ontology.classification": { "title": "Biosample classification" }, "biosample_ontology.organ_slims": { "title": "Organ" }, "biosample_ontology.cell_slims": { "title": "Cell" }, "sex": { "title": "Sex" }, "life_stage": { "title": "Life stage" }, "subcellular_fraction_term_name": { "title": "Subcellular fraction" }, "phase": { "title": "Cell cycle phase" }, "treatments.treatment_term_name": { "title": "Biosample treatment" }, "source.title": { "title": "Source" }, "lab.title": { "title": "Lab" }, "award.project": { "title": "Project" }, "award.rfa": { "title": "RFA" }, "nih_institutional_certification": { "type": "exists", "title": "Has NIH institutional certification" } }, "columns": { "accession": { "title": "Accession" }, "description": { "title": "Description" }, "age": { "title": "Age" }, "age_units": { "title": "Age units" }, "age_display": { "title": "Biosample age" }, "biosample_ontology.term_name": { "title": "Biosample term name" }, "biosample_ontology.classification": { "title": "Biosample classification" }, "synchronization": { "title": "Synchronization" }, "post_synchronization_time": { "title": "Post-synchronization time" }, "post_synchronization_time_units": { "title": "Post-synchronization time units" }, "organism.scientific_name": { "title": "Organism" }, "applied_modifications.modified_site_by_target_id.name": { "title": "Modification site" }, "applied_modifications.purpose": { "title": "Modification purpose" }, "applied_modifications.method": { "title": "Modification method" }, "applied_modifications.category": { "title": "Modification category" }, "source.title": { "title": "Source" }, "lab.title": { "title": "Lab" }, "life_stage": { "title": "Life stage" }, "status": { "title": "Status" }, "treatments.treatment_term_name": { "title": "Biosample treatment" }, "culture_harvest_date": { "title": "Culture harvest date" }, "date_obtained": { "title": "Date obtained" }, "summary": { "title": "Summary" } }, "boost_values": { "accession": 20.0, "@type": 1.0, "aliases": 1.0, "alternate_accessions": 1.0, "biosample_ontology.term_id": 1.0, "biosample_ontology.term_name": 5.0, "biosample_ontology.organ_slims": 1.0, "biosample_ontology.cell_slims": 1.0, "biosample_ontology.developmental_slims": 1.0, "biosample_ontology.synonyms": 5.0, "biosample_ontology.classification": 5.0, "dbxrefs": 1.0, "subcellular_fraction_term_name": 1.0, "phase": 2.0, "life_stage": 1.0, "synchronization": 1.0, "health_status": 1.0, "donor.accession": 1.0, "donor.alternate_accessions": 1.0, "donor.organism.name": 1.0, "donor.organism.scientific_name": 1.0, "donor.organism.taxon_id": 1.0, "award.title": 1.0, "award.project": 1.0, "award.name": 1.0, "submitted_by.email": 1.0, "submitted_by.first_name": 1.0, "submitted_by.last_name": 1.0, "lab.institute_name": 1.0, "lab.institute_label": 1.0, "lab.title": 1.0, "source.title": 1.0, "treatments.treatment_type": 1.0, "treatments.treatment_term_id": 1.0, "treatments.treatment_term_name": 1.0, "treatments.dbxrefs": 1.0, "treatments.aliases": 1.0, "applied_modifications.modified_site_by_target_id.label": 1.0, "applied_modifications.modified_site_by_target_id.dbxref": 1.0, "applied_modifications.modified_site_by_target_id.genes.symbol": 1.0, "applied_modifications.modified_site_by_target_id.aliases": 1.0, "originated_from.accession": 1.0, "originated_from.alternate_accessions": 1.0, "originated_from.biosample_ontology.term_id": 1.0, "originated_from.biosample_ontology.term_name": 1.0, "pooled_from.accession": 1.0, "pooled_from.alternate_accessions": 1.0, "pooled_from.biosample_ontology.term_id": 1.0, "pooled_from.biosample_ontology.term_name": 1.0, "characterizations.characterization_method": 1.0, "organism.name": 10.0, "organism.scientific_name": 1.0, "organism.taxon_id": 1.0, "references.title": 1.0, "award.pi.title": 1.0, "notes": 1.0, "internal_tags": 2.0, "nih_institutional_certification": 1.0, "summary": 5.0, "description": 3.0, "age": 5.0, "age_display": 5.0, "age_units": 2.0, "sex": 2.0 }, "changelog": "/profiles/changelogs/biosample.md" }

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