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Internet routines cannot be loaded when load R Studio from Navigator #4421
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+1 update: separately installed RStudio + R 3.4.1 works fine. |
I get a similar error on a clean install of Anaconda 4.4.0 after doing
Note that @rpath has nothing to do with R, but is a mechanism for finding shared libraries on Mac OS X. Checking under
it still doesn't work, but now it wants to load another library (
...and this solves the problem! At least on my machine. In short, it seems there are two dependencies missing from |
Thanks @slinnarsson, I need to get this fixed ASAP. |
Thanks, this solved the problem.
… On Sep 4, 2017, at 6:14 PM, Sten Linnarsson ***@***.***> wrote:
I get a similar error on a clean install of Anaconda 4.4.0 after doing "conda install rpy2". This is on Mac OS Sierra, and the R version I get is 3.4.1:
> source("http://bioconductor.org/biocLite.R")
Error in file(filename, "r", encoding = encoding) :
internet routines cannot be loaded
In addition: Warning message:
In file(filename, "r", encoding = encoding) :
unable to load shared object '/Users/sten/anaconda3/lib/R/modules//internet.so':
dlopen(/Users/sten/anaconda3/lib/R/modules//internet.so, 6): Library not loaded: @rpath/libssh2.1.dylib
Referenced from: /Users/sten/anaconda3/lib/R/modules//internet.so
Reason: image not found
Note that @rpath <https://github.com/rpath> has nothing to do with R, but is a mechanism for finding shared libraries <https://developer.apple.com/library/content/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/RunpathDependentLibraries.html> on Mac OS X.
Checking under ~/anaconda3/lib indeed there is no libssh2.1.dylib. After doing
conda install libssh2
it still doesn't work, but now it wants to load another library (libgssapi_krb5.2.2.dylib) which we can get by installing krb5:
conda install krb5
...and this solves the problem! At least on my machine.
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This is open until I fix it properly. |
Thanks,it solved my problem!!! |
thanks @slinnarsson, solved for me. |
1 similar comment
thanks @slinnarsson, solved for me. |
Thank you @slinnarsson! It solved the problem I've stuck for 2 days! |
Hello, I have tried to fix the internet routines problem as well by copying conda install krb5 into R studio and trying to run it. I revieved the fallowing error messages Error: unexpected symbol in "conda install" I have macOS Sierra 10.12.4, Anaconda Navigator 1.6.2, and R Studio version 3.4.1 Ultimately I am trying to install caTools but I get the faloowing error message caTools’ is not available (for R version 3.4.1) All my packages are up to date. |
@StealthNameless you need to run the conda comman in your terminal, not inside R studio. |
@slinnarsson You are a hero. |
@slinnarsson Thank you so much. You make my day. |
Awesome @slinnarsson, really saved me. Thank you! |
Thank you, @slinnarsson, it solved the problem |
Thank you @slinnarsson, your solution worked for me. |
black magic, but it works! |
When running |
This is a bug in conda.
Please use `conda install libssh2 python=3.6`
…On Mon, Oct 16, 2017 at 2:44 PM, Cody Kingham ***@***.***> wrote:
When running conda install libssh2, Conda wants to downgrade my Python
package to 3.5.4. Which I don't want.
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@mingwandroid It works. You're the wind in my sails today. ⛵️ |
This is fixed properly now. Make sure you are using the latest |
@slinnarsson Thanks! Solved for me! |
the above suggestions can not solve my problem. |
Using Anaconda Navigator 1.6.3, R Studio version 1.0.153 and R version 3.4.1.
MacBook Air Mac OS version 10.12.6
When launch R Studio with Navigator, I get the following error:
Error in tools::startDynamicHelp() : internet routines cannot be loaded
This R Studio was installed via conda with R Essentials
When I start an older version of R Studio outside of Anaconda Navigator (i.e. a Version of Rstudio I had before I installed the Anaconda version of R Studio) I do not get this problem
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